Anderson, A.; Weng, Z.; J. Mol. Graph. Model1999, 17(3-4), 180-186, 217. VRDD: applying virtual reality visualization to protein docking and design. [PDF I PubMed]
Appling, D.R.; Methods1999, 19(2), 338-349. Genetic approaches to the study of protein-protein interactions. [PDF I PubMed]
Aravind, L.; Walker, D.R.; Koonin, E.V.; Nucleic Acids Res. 1999, 27(5), 1223-1242. Conserved domains in DNA repair proteins and evolution of repair systems. [PDF I PubMed]
Basalaj, W.; Eilbeck, K.; in: Graph Drawing, J. Kratochvíl (Ed.), 7th International Symposium, GD'99, Stirín Castle, Czech Republic, September 1999, Proceedings, Lecture Notes in Computer Science, 1731, 259-267. Straight-line drawings of protein interactions. System demonstration. [HTML]
Beeckmans, S.; Methods1999, 19(2), 278-305. Chromatographic methods to study protein-protein interactions. [PDF I PubMed]
Benfenati, F.; Onofri, F.; Giovedi, S.; Philos. Trans. R. Soc. Lond. B Biol. Sci. 1999, 354(1381), 243-257. Protein-protein interactions and protein modules in the control of neurotransmitter release. [PDF I PubMed]
Betts, M.J.; Sternberg, M.J.; Protein Eng.1999, 12(4), 271-283. An analysis of conformational changes on protein-protein association: implications for predictive docking. [PDF I PubMed]
Blaschke, C.; Andrade, M.A.; Ouzounis, C.; Valencia, A.; Proc. Int. Conf. Intell. Syst. Mol. Biol. 1999, 7, 60-67. Automatic extraction of biological information from scientific text: protein-protein interactions. [PDF I PubMed]
Blomberg, N.; Gabdoulline, R.R.; Nilges, M.; Wade, R.C.; Proteins1999, 37(3), 379-387. Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity. [PDF I PubMed]
Briesewitz, R.; Ray, G.T.; Wandless, T.J.; Crabtree, G.R.; Proc. Natl. Acad. Sci. USA1999, 96(5), 1953-1958. Affinity modulation of small-molecule ligands by borrowing endogenous protein surfaces. [PDF I PubMed]
Camacho, C.J.; Weng, Z.; Vajda, S.; DeLisi, C.; Biophys. J. 1999, 76(3), 1166-1178. Free energy landscapes of encounter complexes in protein-protein association. [PDF I PubMed]
Ceulemans, H.; De Maeyer, M.; Stalmans, W.; Bollen, M.; FEBS Lett. 1999, 456(3), 349-351. A capping domain for LRR protein interaction modules. [PDF I PubMed]
Chakravarty, S.; Varadarajan, R.; Structure Fold. Des. 1999, 7(7), 723-732. Residue depth: a novel parameter for the analysis of protein structure and stability. [PDF I PubMed]
Cooper, A.; Curr. Opin. Chem. Biol.1999, 3(5), 557-563. Thermodynamic analysis of biomolecular interactions. [PDF I PubMed]
Cunha, C.A.; Romao, M.J.; Sadeghi, S.J.; Valetti, F.; Gilardi, G.; Soares, C.M.; J. Biol. Inorg. Chem. 1999, 4(3), 360-374. Effects of protein-protein interactions on electron transfer: docking and electron transfer calculations for complexes between flavodoxin and c-type cytochromes. [PDF I PubMed]
Del Carpio Munoz, C.A.; Yoshimori, A.; Genome Inform. Ser. Workshop Genome Inform.1999, 10, 3-12. MIAX: a novel system for assessment of macromolecular interaction in condensed phases. 1) Description of the interaction model and simulation algorithm. [PDF I PubMed]
DeWitt, N.; Nat. Biotechnol. 1999, 17(12), 1150. Mapping protein interactions by phage display. [PDF I PubMed]
Dove, A.; Nat. Biotechnol. 1999, 17(3), 233-236. Proteomics: translating genomics into products? [PDF I PubMed]
Drees, B.L.; Curr. Opin. Chem. Biol. 1999, 3(1), 64-70. Progress and variations in two-hybrid and three-hybrid technologies. [PDF I PubMed]
Enright, A.J.; Iliopoulos, I.; Kyrpides, N.C.; Ouzounis, C.A.; Nature1999, 402(6757), 86-90. Protein interaction maps for complete genomes based on gene fusion events. [PDF I PubMed]
Fancy, D.A.; Kodadek, T.; Proc. Natl. Acad. Sci. USA1999, 96(11), 6020-6024. Chemistry for the analysis of protein-protein interactions: rapid and efficient cross-linking triggered by long wavelength light. [PDF I PubMed]
Flores, A.; Briand, J.-F.; Gadal, O.; Andrau, J.-C.; Rubbi, L.; van Mullem, V.; Boschiero, C.; Goussot, M.; Marck, C.; Carles, C.; Thuriaux, P.; Sentenac, A.; Werner, M.; Proc. Natl. Acad. Sci. USA1999, 96(14), 7815-7820. A protein-protein interaction map of yeast RNA polymerase III (Saccharomyces cerevisiae/ two-hybrid system). [PDF I PubMed]
Gabdoulline, R.R.; Wade, R.C.; J. Mol. Recognit. 1999, 12(4), 226-234. On the protein-protein diffusional encounter complex. [PDF I PubMed]
Gabdoulline, R.R.; Wade, R.C.; Walther, D.; Trends Biochem. Sci. 1999, 24(7), 285-287. MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins. [PDF I PubMed]
Gaston, S.M.; Loughlin, K.R.; Urology1999, 53(4), 835-842. Now what do we do with all these genes? Yeast-based two-hybrid analysis: an emerging technology for molecular urology in the post-genome era. [PDF I PubMed]
Gell, D.; Jackson, S.P.; Nucleic Acids Res. 1999, 27(17), 3494-3502. Mapping of protein-protein interactions within the DNA-dependent protein kinase complex. [PDF I PubMed]
Hodges, P.E.; McKee, A.H.; Davis, B.P.; Payne, W.E.; Garrels, J.I.; Nucleic Acids Res. 1999, 27(1), 69-73. The yeast proteome database (YPD): a model for the organization and presentation of genome-wide functional data. [PDF I PubMed]
Ikemizu, S.; Sparks, L.M.; van der Merwe, P.A.; Harlos, K.; Stuart, D.I.; Jones, E.Y.; Davis, S.J.; Proc. Natl. Acad. Sci. USA1999, 96(8), 4289-4294. Crystal structure of the CD2-binding domain of CD58 (lymphocyte function-associated antigen 3) at 1.8-A resolution. [PDF I PubMed]
Jackson, R.M.; Protein Sci.1999, 8(3), 603-613. Comparison of protein-protein interactions in serine protease-inhibitor and antibody-antigen complexes: implications for the protein docking problem. [PDF I PubMed]
Jameson, D.M.; Seifried, S.E.; Methods1999, 19(2), 222-233. Quantification of protein-protein interactions using fluorescence polarization. [PDF I PubMed]
Janin, J.; Structure1999, 7(12), R277-R279. Wet and dry interfaces: the role of solvent in protein-protein and protein-DNA recognition. [PubMed]
Kekic, M.; Dos Remedios, C.G.; Electrophoresis1999, 20(10), 2053-2058. Electrophoretic monitoring of pollutants: effect of cations and organic compounds on protein interactions monitored by native gel electrophoresis. [PDF I PubMed]
Langosch, D.; Biospektrum1999, 2, 101-105. Molekulare Erkennung zwischen membranständigen Proteindomänen: Struktur- und zellbiologische Aspekte. [PDF]
Liu, J.O.; Chem. Biol. 1999, 6(8), R213-R215. Recruitment of proteins to modulate protein-protein interactions. [PDF I PubMed]
Lo Conte, L.; Chothia, C.; Janin, J.; J. Mol. Biol.1999, 285(5), 2177-2198. The atomic structure of protein-protein recognition sites. [PDF I PubMed]
Lu, P.J.; Zhou, X.Z.; Shen, M.; Lu, K.P.; Science1999, 283(5406), 1325-1328. Function of WW domains as phosphoserine- or phosphothreonine-binding modules. [PDF I PubMed]
MacKrill, J.J.; Biochem. J. 1999, 337( Pt. 3), 345-361. Protein-protein interactions in intracellular Ca2+-release channel function. [PDF I PubMed]
Marcotte, E.M.; Pellegrini, M.; Ng, H.L.; Rice, D.W.; Yeates, T.O.; Eisenberg, D.; Science1999, 285(5428), 751-753. Detecting protein function and protein-protein interactions from genome sequences. [PDF I PubMed]
Marcotte, E.M.; Pellegrini, M.; Thompson, M.J.; Yeates, T.O.; Eisenberg, D.; Nature1999, 402(6757), 83-86. A combined algorithm for genome-wide prediction of protein function. [PDF I PubMed]
Maroun, M.; Aronheim, A.; Nucleic Acids Res. 1999, 27(13), E4. A novel in vivo assay for the analysis of protein-protein interaction. [PDF I PubMed]
McAlister-Henn, L.; Gibson, N.; Panisko, E.; Methods1999, 19(2), 330-337. Applications of the yeast two-hybrid system. [PDF I PubMed]
Mendelsohn, A.R.; Brent, R.; Science1999, 284(5422), 1948-1950. Protein interaction methods - toward an endgame. [PubMed]
Moont, G.; Gabb, H.A.; Sternberg, M.J.; Proteins 1999, 35(3), 364-373. Use of pair potentials across protein interfaces in screening predicted docked complexes. [PDF I PubMed]
Munder, T.; Hinnen, A.; Appl. Microbiol. Biotechnol. 1999, 52(3), 311-320. Yeast cells as tools for target-oriented screening. [PDF I PubMed]
Ng, S.K.; Wong, M.; Genome Inform Ser Workshop Genome Inform. 1999, 10, 104-112. Toward routine automatic pathway discovery from online scientific text abstracts. [PDF I PubMed]
Nice, E.C.; Catimel, B.; BioEssays1999, 21(4), 339-352. Instrumental biosensors: new perspectives for the analysis of biomolecular interactions. [PDF I PubMed]
Norel, R.; Petrey, D.; Wolfson, H.J.; Nussinov, R.; Proteins1999, 36(3), 307-317. Examination of shape complementarity in docking of unbound proteins. [PDF I PubMed]
Norel, R.; Wolfson, H.J.; Nussinov, R.; Comb. Chem. High Throughput Screen1999, 2(4), 223-237. Small molecule recognition: solid angles surface representation and molecular shape complementarity. [PubMed]
Ostermeier, M.; Benkovic, S.J.; Nat. Biotechnol.1999, 17(7), 639-640. Finding Cinderella’s slipper-proteins that fit. [PDF I PubMed]
Otlewski, J.; Krowarsch, D.; Apostoluk, W.; Acta Biochim. Pol.1999, 46(3), 531-565. Protein inhibitors of serine proteinases. [PubMed]
Pause, A.; Peterson, B.; Schaffar, G.; Stearman, R.; Klausner, R.D.; Proc. Natl. Acad. Sci. USA1999, 96(17), 9533-9538. Studying interactions of four proteins in the yeast two-hybrid system: structural resemblance of the pVHL/elongin BC/hCUL-2 complex with the ubiquitin ligase complex SKP1/cullin/F-box protein. [PDF I PubMed]
Pelletier, J.N.; Arndt, K.M.; Plückthun, A.; Michnick, S.W.; Nat. Biotechnol.1999, 17(7), 683-690. An in vivo library-versus-library selection of optimized protein-protein interactions. [PDF I PubMed]
Periasamy, A.; Day, R.N.; Methods Cell. Biol.1999, 58, 293-314. Visualizing protein interactions in living cells using digitized GFP imaging and FRET microscopy. [PubMed]
Pierce, M.M.; Raman, C.S.; Nall, B.T.; Methods1999, 19(2), 213-221. Isothermal titration calorimetry of protein-protein interactions. [PDF I PubMed]
Raffen, R.; Stevens, F.J.; Methods Enzymol. 1999, 309, 318-332. Small zone, high-speed gel filtration chromatography to detect protein aggregation associated with light chain pathologies. [PubMed]
Remy, I.; Michnick, S.W.; Proc. Natl. Acad. Sci. USA1999, 96(10), 5394-5399. Clonal selection and in vivo quantitation of protein interactions with protein-fragment complementation assays. [PDF I PubMed]
Rivas, G.; Stafford, W.; Minton, A.P.; Methods1999, 19(2), 194-212. Characterization of heterologous protein-protein interactions using analytical ultracentrifugation. [PDF I PubMed]
Roberts, V.A.; Pique, M.E.; J. Biol. Chem.1999, 274(53), 38051-38060. Definition of the interaction domain for cytochrome c on cytochrome c oxidase. III. Prediction of the docked complex by a complete, systematic search. [PDF I PubMed]
Ruggiero, C.; Mantelli, M.; Curtis, A.; Zhang, S.; Rolfe, P.; Med. Biol. Eng. Comput.1999, 37(1), 119-124. Computer modelling of the adsorption of proteins on solid surfaces under the influence of double layer and van der Waals energy. [PubMed]
Salamonsen, W.; Mok, K.Y.; Kolatkar, P.; Subbiah, S.; Pac. Symp. Biocomput. 1999, 392-400. BioJAKE: a tool for the creation, visualization and manipulation of metabolic pathways. [PDF I PubMed]
Sali, A.; Nature1999, 402, 23-26. Genomics: functional links between proteins. [HTML I PDF I PubMed]
Sanchez, C.; Lachaize, C.; Janody, F.; Bellon, B.; Roder, L.; Euzenat, J.; Rechenmann, F.; Jacq, B.; Nucleic Acids Res.1999, 27(1), 89-94. Grasping at molecular interactions and genetic networks in Drosophila melanogaster using FlyNets, an internet database. [PDF I PubMed]
Sanner, M.F.; Duncan, B.S.; Carrillo, C.J.; Olson, A.J.; Pac. Symp. Biocomput.1999, 401-412. Integrating computation and visualization for biomolecular analysis: an example using python and AVS. [PDF I PubMed]
Santolini, E.; Salcini, A.E.; Kay, B.K.; Yamabhai, M.; Di Fiore, P.P.; Exp. Cell Res. 1999, 253(1), 186-209. The EH network. [PDF I PubMed]
Scofield, R.H.; Kurien, B.T.; Zhang, F.; Mehta, P.; Kaufman, K.; Gross, T.; Bachmann, M.; Gordon, T.; Harley, J.B.; Mol. Immunol.1999, 36(15-16), 1093-1106. Protein-protein interaction of the Ro-ribonucleoprotein particle using multiple antigenic peptides. [PubMed]
Serebriiskii, I.; Khazak, V.; Golemis, E.A.; J. Biol. Chem.1999, 274(24), 17080-17087. A two-hybrid dual bait system to discriminate specificity of protein interactions. [PDF I PubMed]
Shevchenko, A.; Zachariae, W.; Shevchenko, A.; Biochem. Soc. Trans. 1999, 27(4), 549-554. A strategy for the characterization of protein interaction networks by mass spectrometry. [PubMed]
Sloan, D.J.; Hellinga, H.W.; Protein Sci.1999, 8(8), 1643-1648. Dissection of the protein G B1 domain binding site for human IgG Fc fragment. [PDF I PubMed]
Sun, H.; Pan, Y.C.; J. Biochem. Biophys. Methods1999, 39(3), 143-151. Using native gel in two-dimensional PAGE for the detection of protein interactions in protein extract. [PDF I PubMed]
Tang, Y.; Hu, L.A.; Miller, W.E.; Ringstad, N.; Hall, R.A.; Pitcher, J.A.; DeCamilli, P.; Lefkowitz, R.J.; Proc. Natl. Acad. Sci. USA1999, 96(22), 12559-12564. Identification of the endophilins (SH3p4/p8/p13) as novel binding partners for the beta1-adrenergic receptor. [PDF I PubMed]
Thomas, T.; Shah, N.; Klinge, C.M.; Faaland, C.A.; Adihkarakunnathu, S.; Gallo, M.A.; Thomas, T.J.; J. Mol. Endocrinol. 1999, 22(2), 131-139. Polyamine biosynthesis inhibitors alter protein-protein interactions involving estrogen receptor in MCF-7 breast cancer cells. [PDF I PubMed]
Torshin, I.; Front. Biosci.1999, 4, D557-D570. Activating oligomerization as intermediate level of signal transduction: analysis of protein-protein contacts and active sites in several glycolytic enzymes. [HTML I PubMed]
Traviglia, S.L.; Datwyler, S.A.; Meares, C.F.; Biochemistry1999, 38(14), 4259-4265. Mapping protein-protein interactions with a library of tethered cutting reagents: the binding site of sigma 70 on Escherichia coli RNA polymerase. [PDF I PubMed]
Trosset, J.Y.; Scheraga, H.A.; J. Comput. Chem.1999, 20, 412-427. PRODOCK: software package for protein modeling and docking. [PDF]
Tulp, A.; Verwoerd, D.; Neefjes, J.; J. Chromatogr. B Biomed. Sci. Appl.1999, 722(1-2), 141-151. Electromigration for separations of protein complexes. [PubMed]
Van Criekinge, W.; Beyaert, R.; Biol. Proced. Online1999, 2(1), 1-38. Yeast two-hybrid: state of the art. [HTML I PDF I PubMed]
Vakser, I.A.; Matar, O.G.; Lam, C.F.; Proc. Natl. Acad. Sci. USA1999, 96(15), 8477-8482. A systematic study of low-resolution recognition in protein-protein complexes. [PDF I PubMed]
Vaughan, C.K.; Buckle, A.M.; Fersht, A.R.; J. Mol. Biol. 1999, 286(5), 1487-1506. Structural response to mutation at a protein-protein interface. [PDF I PubMed]
Vergnon, A.L.; Chu, Y.H.; Methods1999, 19(2), 270-277. Electrophoretic methods for studying protein-protein interactions. [PDF I PubMed]
Vidal, M.; Endoh, H.; Trends Biotechnol. 1999, 17(9), 374-381. Prospects for drug screening using the reverse two-hybrid system. [PDF I PubMed]
Vidal, M.; Legrain, P.; Nucleic Acids Res. 1999, 27(4), 919-929. Yeast forward and reverse 'n'-hybrid systems. [PDF I PubMed]
Walhout, A.J.; Vidal, M.; Genome Res. 1999, 9(11), 1128-1134. A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens. [PDF I PubMed]
Wolf, I.; Rohrschneider, L.R.; J. Biol. Chem. 1999, 274(30), 21478-21484. Fiz1, a novel zinc finger protein interacting with the receptor tyrosine kinase Flt3. [PDF I PubMed]
Xu, Y.; Piston, D.W.; Johnson, C.H.; Proc. Natl. Acad. Sci. USA1999, 96(1), 151-156. A bioluminescence resonance energy transfer (BRET) system: application to interacting circadian clock proteins. [PDF I PubMed]
Yang, Q.H.; Li, L.; Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai) 1999, 31(3), 221-225. Yeast two-hybrid system and its application on proteomics. [PubMed]
Zhang, C.; Chen, J.; DeLisi, C.; Proteins 1999, 34(2), 255-267. Protein-protein recognition: exploring the energy funnels near the binding sites. [PDF I PubMed]
Zozulya, S.; Lioubin, M.; Hill, R.J.; Abram, C.; Gishizky, M.L.; Nat. Biotechnol. 1999, 17(12), 1193-1198. Mapping signal transduction pathways by phage display. [PDF I PubMed]